Cracking the Code


Researcher's Know-how Turns Jellyfish Protein
Into Tool for Medical Science


In the cold ocean current off the San Juan Islands, a graceful Pacific Northwest jellyfish, Aequorea victoria, hypnotically undulates like a shaggy parasol, softly emitting a green, other-worldly glow. The cause of the glow--green fluorescent portein, or GFP--is the only known spontaneously fluorescent protein in all of nature. In the past five years, thousands of biomedical researchers around the world have begun using this exotic jellyfish protein (now cultured in bacteria) as a tiny lantern illuminating important biological processes previously hidden from view. Groundbreaking work to expand dramatically the usefulness of this remarkable protein is taking place at the University of Oregon in the lab of molecular biologist Jim Remington.

"This unique characteristic of GFP makes it extremely useful for biomedical researchers," says Remington, an associate professor of physics. "It gives them a window through which to peer at the inner workings of any type of living cell."

For example, by using genetic engineering techniques researchers can splice GFP onto other proteins of interest--say, a therapeutic hormone--so that where the hormone goes, the GFP goes. Shining a certain kind of light on the cell causes the GFP to glow and allows a scientist to see where the hormone lodges and where it has the most potent effect. Similarly, a researcher studying a particular gene can replace part of that gene with GFP so that when the gene "turns on" the GFP also lights up.

"Scientists were finding new uses and even more interesting properties of the protein on nearly a daily basis," Remington asserts. "But curiously, no one knew exactly how the GFP worked--they didn't know how it hung together."

An expert in cracking the molecular codes of complex proteins, Remington decided to decipher the enigmatic molecule. In a concentrated nine-month effort, he and two fellow UO researchers determined GFP's structure. They discovered the elegant assemblage is composed of 238 amino acids arranged in a stable birdcage-shaped structure with a small glowing strand of matter suspended within like an incandescent parakeet on a perch.

"Now that we know the structure, we can begin modifying it for additional uses," Remington says. His research team has already changed one of GFP's 238 amino acids to create a protein with a yellow glow; now they are working on a blue-green variant. Other labs have created blue- and red-glowing versions of GFP.

What use are these differently glowing GFPs?

"By itself, GFP provides a simple on-off test," Remington explains. "But researchers could use a variety of colored GFPs to test for a number of different possibilities at one time. This makes it a much more useful tool."

Remington's team is working on one version of the protein that responds to changes in pH--the chemical scale of alkalinity and acidity--that are associated with a wide range of cellular activities.

Another modified version under study signals changes in calcium concentration. Calcium levels fluctuate just before a nerve cell fires, so an indicator of when this takes place could be very useful in research into nerve tissue regeneration.

Remington also notes that since GFP fluorescence can be turned on and off with light, it is easy to envision using it as a bio-optical data storage device. A CD-sized storage disc, Remington calculates, could potentially hold ten thousand times the data of one of today's CD-ROMs.

"This protein is a key," he says. "It is already unlocking many doors, and it promises to unlock others that we've been well aware of but have been unable to open."


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